The great ideas of biology: Exploration through experimentation in an undergraduate lab course

We developed an introductory laboratory course to provide a visceral experience that aims at getting students truly excited about scientific study of the living world. Our vehicle to do that was to focus on what Paul Nurse dubbed “the great ideas of biology” rather than an approach to biology that celebrates specific factual knowledge. To that end, we developed eight diverse experimental modules, each of which highlights a key biological concept and gives an opportunity to use theory to generate testable hypotheses, to perform high quality measurements to test those hypotheses (some of which are clearly wrong), and to perform sophisticated computational data analysis. Some modules incorporate modern microscopy and computational techniques in classic experiments, such as bacterial growth and the Luria‐Delbrück experiment, while others address current research questions using methods like optogenetics and single molecule measurements. We have offered the course eight times, and in the most recent edition of the course, we conducted pre/post‐course interviews and attitude surveys. The students, both bio and non‐bio majors alike, reported being captivated by seeing life occur across the broad range of experiments and model organisms. We observed demonstrable development of their curiosity and enthusiasm for biology. Additionally, we found that prior to the course, students had only vague notions about what it means to make quantitative biological measurements and interpret them. They completed the course with a clearer understanding of scientific inquiry in biology and the skills and confidence to actually perform and interpret measurements in living systems

Empowering patients with high myopia:The significance of education

Purpose: To investigate the status of patient education among highly myopic individuals focusing on the presence, sources, content, timing of the education and impact on patients. Methods: Self-reported data were collected through an online 13-item questionnaire consisting of open and multiple-choice questions. The questionnaire was sent to 250 highly myopic members of a patient organization in the Netherlands, of whom 128 (51%) responded. Results: At least one acute event had occurred in 66% (84/128) of participants at the time of the questionnaire. Among all participants, 25% (32/128) had not received patient education regarding alarm symptoms for any of these events. Among those who had been informed, the ophthalmologist was the most frequent (57%, 73/128) source of information. Participants who visited the ophthalmologist annually were more frequently informed than participants without annual visits (53%, 26/49 versus 26%, 9/35, p = 0.002). Those not informed were more likely to have a more than 3 days patient delay (92%, 12/13). Doctors delay was also present; 26% (22/84) of the participants with alarm symptoms had to wait 2 or more days before the first appointment. Long-term consequences of myopia had been discussed with 102 participants (80%, 102/128), again with the ophthalmologist as the most frequent source (59%, 76/128). Perspectives: Many myopic individuals have not been educated about their increased risk of acute events, which can result in patient delay and serious consequences with respect to visual prognosis. These findings underscore the critical importance of integrating patient education across the entire ophthalmic care chain for myopia.</p

Determining the probability of cyanobacterial blooms: the application of Bayesian networks in multiple lake systems

A Bayesian network model was developed to assess the combined influence of nutrient conditions and climate on the occurrence of cyanobacterial blooms within lakes of diverse hydrology and nutrient supply. Physicochemical, biological, and meteorological observations were collated from 20 lakes located at different latitudes and characterized by a range of sizes and trophic states. Using these data, we built a Bayesian network to (1) analyze the sensitivity of cyanobacterial bloom development to different environmental factors and (2) determine the probability that cyanobacterial blooms would occur. Blooms were classified in three categories of hazard (low, moderate, and high) based on cell abundances. The most important factors determining cyanobacterial bloom occurrence were water temperature, nutrient availability, and the ratio of mixing depth to euphotic depth. The probability of cyanobacterial blooms was evaluated under different combinations of total phosphorus and water temperature. The Bayesian network was then applied to quantify the probability of blooms under a future climate warming scenario. The probability of the "high hazardous" category of cyanobacterial blooms increased 5% in response to either an increase in water temperature of 0.8°C (initial water temperature above 24°C) or an increase in total phosphorus from 0.01 mg/L to 0.02 mg/L. Mesotrophic lakes were particularly vulnerable to warming. Reducing nutrient concentrations counteracts the increased cyanobacterial risk associated with higher temperatures

Mechanical activation of vinculin binding to talin locks talin in an unfolded conformation

The force-dependent interaction between talin and vinculin plays a crucial role in the initiation and growth of focal adhesions. Here we use magnetic tweezers to characterise the mechano-sensitive compact N-terminal region of the talin rod, and show that the three helical bundles R1-R3 in this region unfold in three distinct steps consistent with the domains unfolding independently. Mechanical stretching of talin R1-R3 enhances its binding to vinculin and vinculin binding inhibits talin refolding after force is released. Mutations that stabilize R3 identify it as the initial mechano-sensing domain in talin, unfolding at ~5 pN, suggesting that 5 pN is the force threshold for vinculin binding and adhesion progression

Monolithes de silice et de carbone à porosité hiérarchisée obtenus par frittage SPS

La silice SBA-15 et le carbone CMK-3 possèdent une grande surface spécifique et un volume important de mésopores ordonnés dans une symétrie hexagonale (groupe d’espace p6 mm). Il est nécessaire de préserver leurs caractéristiques lors de la mise en forme de ces matériaux, pour un grand nombre d’applications. Le frittage SPS (Spark Plasma Sintering) des poudres a été effectué sans charge ou avec une charge uniaxiale de 25 MPa et à des températures de 600 à 800 ◦C pour la silice et 1100 à 1300 ◦C pour le carbone, pendant 5 minutes. Les isothermes d’adsorption/désorption d’azote montrent que les monolithes obtenus conservent une surface spécifique élevée (300 à 500 m2/g) et un volume mésoporeux de l’ordre de 0,7 cm3/g. La coexistence de la mésoporosité et d’une macroporosité interconnectée de volume voisin est observée par MEB (Microscopie Électronique à Balayage) et MET (Microscopie Électronique en Transmission). En outre, l’organisation de la mésoporosité est partiellement maintenue comme le mettent en évidence la DRX (Diffraction des Rayons X) et la MET

Automatic mode tracking for flight dynamic analysis using a spanning algorithm

Identifying and tracking dynamic modes in a multi-dimensional parameter space is a problem that presents itself in many engineering disciplines. In a flight dynamics context, the dynamic modes refer to the modes of motion obtained from a linearisation of the aircraft system about a known operating point. Typically dynamic results derived from these linear models are unsorted, where mode indices are unrelated from one operating point to the next. When varying the parameters, or in this case operating point, difficulties in automating the process of relating modes from a linear system derived at one parameter set to the next exists. This paper builds on the work in tracking modes in a structural context, using the Modal Assurance Criterion (MAC) to numerically relate modes from two comparable linear systems. The (MAC) is deployed within a spanning algorithm to discover and identify all modes within all conditions, with their relationship to adjacent/neighbouring conditions. This is tested on a 1-, 2- and 3-dimensional parameter space, twelve state system

Characterization of PECVD Silicon Nitride Photonic Components at 532 and 900 nm Wavelength

Low temperature PECVD silicon nitride photonic waveguides have been fabricated by both electron beam lithography and 200 mm DUV lithography. Propagation losses and bend losses were both measured at 532 and 900 nm wavelength, revealing sub 1dB/cm propagation losses for cladded waveguides at both wavelengths for single mode operation. Without cladding, propagation losses were measured to be in the 1-3 dB range for 532 nm and remain below 1 dB/cm for 900 nm for single mode waveguides. Bend losses were measured for 532 nm and were well below 0.1 dB per 90 degree bend for radii larger than 10 mu m

Gravitational decoherence of planetary motions

We study the effect of the scattering of gravitational waves on planetary motions, say the motion of the Moon around the Earth. Though this effect has a negligible influence on dissipation, it dominates fluctuations and the associated decoherence mechanism, due to the very high effective temperature of the background of gravitational waves in our galactic environment.Comment: 6 pages, no figure, to appear in EuroPhysics Letters; needs `epl.cls

THEORETICAL STUDIES OF BILIPROTEIN CHROMOPHORES AND RELATED BILE PIGMENTS BY MOLECULAR ORBITAL AND RAMACHANDRAN TYPE CALCULATIONS

Ramachandran calculations have been used to gain insight into steric hindrance in bile pigments related to biliprotein chromophores. The high optical activity of denatured phycocyanin, as compared to phycoerythrin, has been related to the asymmetric substitution at ring A, which shifts the equilibrium towards the P-helical form of the chromophore. Geometric effects on the electronic structures and transitions have then been studied by molecular orbital calculations for several conjugation systems including the chromophores of phycocyanin. phytochrome P,, cations, cation radicals and tautomeric forms. For these different chromophores some general trends can be deduced. For instance, for a given change in the gross shape (e.g. either unfolding of the molecule from a cyclic-helical to a fully extended geometry, or upon out-of-plane twists of the pyrrole ring A) of the molecules under study, the predicted absorption spectra all change in a simikar way. Nonetheless, there are characteristic distinctions between the different n-systems, both in the transition energies and the charge distribution, which can be related to their known differences in spectroscopic properties and their reactivity